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Sounds like you didn't set up the materials for sc2.
Try this guy's importer (at the bottom).
http://www.sc2mapster.com/forums/development/artist-tavern/69020-wow-to-sc2-made-nice-fast-and-easy-research/?page=2
Make sure your final export for art tools has "Use Mopaq Paths" checked. Then your textures go into assets\textures\.
Sounds like you didn't set up the materials for sc2.
Try this guy's importer (at the bottom).
http://www.sc2mapster.com/forums/development/artist-tavern/69020-wow-to-sc2-made-nice-fast-and-easy-research/?page=2
Make sure your final export for art tools has "Use Mopaq Paths" checked. Then your textures go into assets\textures\.